Physical influences on phytoplankton ecology : models and observations

Thesis (Ph. D.)--Joint Program in Oceanography (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2013.Cataloged from PDF version of thesis.Includes bibliographical references (p. 143-154).The physical environment in the oceans dictates not only how phytoplankton cells are dispersed and their populations intermingled, but also mediates the supply of nutrients to the surface mixed layer. In this thesis I explore both of these aspects of the interaction between phytoplankton ecology and ocean physics, and have approached this topic in two distinct but complementary ways, working with a global ocean ecosystem model, and collecting data at sea. In the first half of the thesis, I examine the role of mesoscale physical features in shaping phytoplankton community structure and influencing rates of primary production. I compare the output of a complex marine ecosystem model coupled to coarse resolution and eddy-permitting physical models. Explicitly resolving eddies resulted in marked regional variations in primary production, zooplankton and phytoplankton biomass. The same phytoplankton phenotypes persisted in both cases, and were dominant in the same regions. Global phytoplankton diversity was unchanged. However, levels of local phytoplankton diversity were markedly different, with a large increase in local diversity in the higher resolution model. Increased diversity could be attributed to a combination of enhanced dispersal, environmental variability and nutrient supply in the higher resolution model. Diversity "hotspots" associated with western boundary currents and coastal upwelling zones are sustained through a combination of all of these factors. In the second half of the thesis I describe the results of a fine scale ecological and biogeochemical survey of the Kuroshio Extension Front. I found fine scale patterns in physical, chemical and biological properties that can be linked back to both the large scale horizontal and smaller scale vertical physical dynamics of the study region. A targeted genomic analysis of samples focused on the ecology of the picoeukaryote Ostreococcus clade distributions strongly supports the model derived hypotheses about the mechanisms supporting diversity hotspots. Strikingly, two distinct clades of Ostreococcus co-occur in more than half of the samples. A "hotspot" of Ostreococcus diversity appears to be supported by a confluence of water masses containing either clade, as well as a local nutrient supply at the front and the mesoscale variability of the region.by Sophie Anne Clayton.Ph.D

Marine Phytoplankton Functional Types Exhibit Diverse Responses to Thermal Change

Marine phytoplankton generate half of global primary production, making them essential to ecosystem functioning and biogeochemical cycling. Though phytoplankton are phylogenetically diverse, studies rarely designate unique thermal traits to different taxa, resulting in coarse representations of phytoplankton thermal responses. Here we assessed phytoplankton functional responses to temperature using empirically derived thermal growth rates from four principal contributors to marine productivity: diatoms, dinoflagellates, cyanobacteria, and coccolithophores. Using modeled sea surface temperatures for 1950-1970 and 2080-2100, we explored potential alterations to each group\u27s growth rates and geographical distribution under a future climate change scenario. Contrary to the commonly applied Eppley formulation, our data suggest phytoplankton functional types may be characterized by different temperature coefficients (Q(10)), growth maxima thermal dependencies, and thermal ranges which would drive dissimilar responses to each degree of temperature change. These differences, when applied in response to global simulations of future temperature, result in taxon-specific projections of growth and geographic distribution, with low-latitude coccolithophores facing considerable decreases and cyanobacteria substantial increases in growth rates. These results suggest that the singular effect of changing temperature may alter phytoplankton global community structure, owing to the significant variability in thermal response between phytoplankton functional types. Phytoplankton communities are important players in biogeochemical processes, but are sensitive to global warming. Here, a meta-analysis shows how the varied responses of phytoplankton to rising temperatures could potentially alter growth dynamics and community structure in a future ocean

Temporal and Spatial Scales of Correlation in Marine Phytoplankton Communities

Ocean circulation shapes marine phytoplankton communities by setting environmental conditions and dispersing organisms. In addition, processes acting on the water column (e.g., heat fluxes and mixing) affect the community structure by modulating environmental variables that determine in situ growth and loss rates. Understanding the scales over which phytoplankton communities vary in time and space is key to elucidate the relative contributions of local processes and ocean circulation on phytoplankton distributions. Using a global ocean ecosystem model, we quantify temporal and spatial correlation scales for phytoplankton phenotypes with diverse functional traits and cell sizes. Through this analysis, we address these questions: (1) Over what timescales do perturbations in phytoplankton populations persist? and (2) over what distances are variations in phytoplankton populations synchronous? We find that correlation timescales are short in regions of strong currents, such as the Gulf Stream and Antarctic Circumpolar Current. Conversely, in the subtropical gyres, phytoplankton population anomalies persist for relatively long periods. Spatial correlation length scales are elongated near ocean fronts and narrow boundary currents, reflecting flow paths and frontal patterns. In contrast, we find nearly isotropic spatial correlation fields where current speeds are small, or where mixing acts roughly equally in all directions. Phytoplankton timescales and length scales also vary coherently with phytoplankton body size. In addition to aiding understanding of phytoplankton population dynamics, our results provide global insights to guide the design of biological ocean observing networks and to better interpret data collected at long-term monitoring stations

Interpreting Mosaics of Ocean Biogeochemistry

Advances in technology and modeling capabilities are driving a surge in progress in our understanding of how ocean ecosystems mix and mingle on medium to small scales

Inspiration on Social Media: Applying an Entertainment Perspective to Longitudinally Explore Mental Health and Well-Being

The conditions under which social media use impacts well-being and mental health are complex. The current 10-day longitudinal quasi-experiment (student sample, N = 111) applied an entertainment theory lens to explore the effects of active posting and engaging with hedonic or inspiring Facebook content (vs. passive browsing) on young people’s eudaimonic well-being (levels of connectedness to humanity, love, compassion, presence of meaning) and mental health (anxiety and depressive symptoms). The results provide tentative evidence that finding and sharing inspiring content to a Facebook group increased love and compassion toward others over time. It also led to more compassion at the end of the study compared to participants who shared hedonic content. Although we did not find an increase in connectedness and meaningfulness over time for participants sharing content that they found inspiring, the latter also did not take away from those experiences, regardless of how they used it. Similarly, no decrease—but also no increase—in anxiety and depressive symptoms were found over time, regardless of condition. The study stresses the importance of better understanding the content young adults engage with on social media for their mental health and well-being

Functional Locomotor Consequences of Uneven Forefeet for Trot Symmetry in Individual Riding Horses

ABSTRACT: Left-right symmetrical distal limb conformation can be an important prerequisite for a successful performance, and it is often hypothesized that asymmetric or uneven feet are important enhancing factors for the development of lameness. On a population level, it has been demonstrated that uneven footed horses are retiring earlier from elite level competition, but the biomechanical consequences are not yet known. The objectives of this study were to compare the functional locomotor asymmetries of horses with uneven to those with even feet. Hoof kinetics and distal limb kinematics were collected from horses (n = 34) at trot. Dorsal hoof wall angle was used to classify horses as even or uneven (1.5° difference between forefeet respectively) and individual feet as flat (55°). Functional kinetic parameters were compared between even and uneven forefeet using MANOVA followed by ANOVA. The relative influences of differences in hoof angle between the forefeet and of absolute hoof angle on functional parameters were analysed using multiple regression analysis (P<0.05). In horses with uneven feet, the side with the flatter foot showed a significantly larger maximal horizontal braking and vertical ground reaction force, a larger vertical fetlock displacement and a suppler fetlock spring. The foot with a steeper hoof angle was linearly correlated with an earlier braking-propulsion transition. The conformational differences between both forefeet were more important for loading characteristics than the individual foot conformation of each individual horse. The differences in vertical force and braking force between uneven forefeet could imply either an asymmetrical loading pattern without a pathological component or a subclinical lameness as a result of a pathological development in the steeper foot

High rates of N-2 fixation in temperate, western North Atlantic coastal waters expand the realm of marine diazotrophy

© The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Mulholland, M. R., Bernhardt, P. W., Widner, B. N., Selden, C. R., Chappell, P. D., Clayton, S., Mannino, A., & Hyde, K. High rates of N-2 fixation in temperate, western North Atlantic coastal waters expand the realm of marine diazotrophy. Global Biogeochemical Cycles, 33(7), (2019): 826-840, doi:10.1029/2018GB006130.Dinitrogen (N2) fixation can alleviate N limitation of primary productivity by introducing fixed nitrogen (N) to the world's oceans. Although measurements of pelagic marine N2 fixation are predominantly from oligotrophic oceanic regions, where N limitation is thought to favor growth of diazotrophic microbes, here we report high rates of N2 fixation from seven cruises spanning four seasons in temperate, western North Atlantic coastal waters along the North American continental shelf between Cape Hatteras and Nova Scotia, an area representing 6.4% of the North Atlantic continental shelf area. Integrating average areal rates of N2 fixation during each season and for each domain in the study area, the estimated N input from N2 fixation to this temperate shelf system is 0.02 Tmol N/year, an amount equivalent to that previously estimated for the entire North Atlantic continental shelf. Unicellular group A cyanobacteria (UCYN‐A) were most often the dominant diazotrophic group expressing nifH, a gene encoding the nitrogenase enzyme, throughout the study area during all seasons. This expands the domain of these diazotrophs to include coastal waters where dissolved N concentrations are not always depleted. Further, the high rates of N2 fixation and diazotroph diversity along the western North Atlantic continental shelf underscore the need to reexamine the biogeography and the activity of diazotrophs along continental margins. Accounting for this substantial but previously overlooked source of new N to marine systems necessitates revisions to global marine N budgets.Data presented in the body and supporting information of this manuscript have been deposited in the National Aeronautics and Space Administration (NASA) repository, SeaBASS and is publicly available at the following DOI address: 10.5067/SeaBASS/CLIVEC/DATA 001. This work was supported by a grant from NASA Grant Number: NNX09AE45G to M. R. M., A. M., and K. H.; a grant from NSF to P. D. C; and the Jacques S. Zaneveld and Neil and Susan Kelley Endowed Scholarships to C. S. We thank NOAA for ship time and the captain and crew of NOAA vessels Delaware II and Henry Bigelow for assistance during field sampling. Data have been submitted to SeaBASS (https://seabass.gsfc.nasa.gov/), NASA's preferred archival repository

Bio-GO-SHIP: the time is right to establish global repeat sections of ocean biology

© The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Clayton, S., Alexander, H., Graff, J. R., Poulton, N. J., Thompson, L. R., Benway, H., Boss, E., & Martiny, A. Bio-GO-SHIP: the time is right to establish global repeat sections of ocean biology. Frontiers in Marine Science, 8, (2022): 767443, https://doi.org/10.3389/fmars.2021.767443.In this article, we present Bio-GO-SHIP, a new ocean observing program that will incorporate sustained and consistent global biological ocean observations into the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP). The goal of Bio-GO-SHIP is to produce systematic and consistent biological observations during global ocean repeat hydrographic surveys, with a particular focus on the planktonic ecosystem. Ocean plankton are an essential component of the earth climate system, form the base of the oceanic food web and thereby play an important role in influencing food security and contributing to the Blue Economy. Despite its importance, ocean biology is largely under-sampled in time and space compared to physical and chemical properties. This lack of information hampers our ability to understand the role of plankton in regulating biogeochemical processes and fueling higher trophic levels, now and in future ocean conditions. Traditionally, many of the methods used to quantify biological and ecosystem essential ocean variables (EOVs), measures that provide valuable information on the ecosystem, have been expensive and labor- and time-intensive, limiting their large-scale deployment. In the last two decades, new technologies have been developed and matured, making it possible to greatly expand our biological ocean observing capacity. These technologies, including cell imaging, bio-optical sensors and 'omic tools, can be combined to provide overlapping measurements of key biological and ecosystem EOVs. New developments in data management and open sharing can facilitate meaningful synthesis and integration with concurrent physical and chemical data. Here we outline how Bio-GO-SHIP leverages these technological advances to greatly expand our knowledge and understanding of the constituents and function of the global ocean plankton ecosystem.The Bio-GO-SHIP pilot program was funded under the National Oceanographic Partnership Program as an inter-agency partnership between NOAA and NASA, with the US Integrated Ocean Observing System and NOAA's Global Ocean Monitoring and Observing program (HA, SC, JG, AM, and NP). HA was supported by a WHOI Independent Research and Development award. AM was supported by funding from NSF OCE-1848576 and 1948842 and NASA 80NSSC21K1654. JG was funded by NASA from grants 80NSSC17K0568 and NNX15AAF30G. LT was supported by award NA06OAR4320264 06111039 to the Northern Gulf Institute by NOAA's Office of Oceanic and Atmospheric Research, U.S. Department of Commerce

Global perspectives on observing ocean boundary current systems

Ocean boundary current systems are key components of the climate system, are home to highly productive ecosystems, and have numerous societal impacts. Establishment of a global network of boundary current observing systems is a critical part of ongoing development of the Global Ocean Observing System. The characteristics of boundary current systems are reviewed, focusing on scientific and societal motivations for sustained observing. Techniques currently used to observe boundary current systems are reviewed, followed by a census of the current state of boundary current observing systems globally. The next steps in the development of boundary current observing systems are considered, leading to several specific recommendations.Fil: Todd, Robert E.. Woods Hole Oceanographic Institution; Estados UnidosFil: Chavez, Francisco. Monterey Bay Aquarium Research Institute; Estados UnidosFil: Clayton, Sophie. Old Dominion University; Estados UnidosFil: Cravatte, Sophie E.. Centre National de la Recherche Scientifique. Institut de Recherche pour le Développement; Francia. Universite de Toulouse; FranciaFil: Goes, Marlos P.. University of Miami; Estados UnidosFil: Graco, Michelle I.. Instituto del Mar del Peru; PerúFil: Lin, Xiaopei. Ocean University of China; ChinaFil: Sprintall, Janet. University of California; Estados UnidosFil: Zilberman, Nathalie V.. University of California; Estados UnidosFil: Archer, Matthew. California Institute of Technology; Estados UnidosFil: Arístegui, Javier. Universidad de Las Palmas de Gran Canaria; EspañaFil: Balmaseda, Magdalena A.. European Centre for Medium-Range Weather Forecasts; Reino UnidoFil: Bane, John M.. University of North Carolina; Estados UnidosFil: Baringer, Molly O.. Atlantic Oceanographic and Meteorological Laboratory ; Estados UnidosFil: Barth, John A.. State University of Oregon; Estados UnidosFil: Beal, Lisa M.. University of Miami; Estados UnidosFil: Brandt, Peter. Geomar-Helmholtz Centre for Ocean Research Kiel; AlemaniaFil: Calil, Paulo H.. Universidade Federal do Rio Grande; BrasilFil: Campos, Edmo. Universidade de Sao Paulo; BrasilFil: Centurioni, Luca R.. University of California; Estados UnidosFil: Chidichimo, María Paz. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Ministerio de Defensa. Armada Argentina. Servicio de Hidrografía Naval; ArgentinaFil: Cirano, Mauro. Universidade Federal do Rio de Janeiro; BrasilFil: Cronin, Meghan F.. National Oceanic and Atmospheric Administration. Pacific Marine Environmental Laboratory; Estados UnidosFil: Curchitser, Enrique N.. Rutgers University; Estados UnidosFil: Davis, Russ E.. University of California; Estados UnidosFil: Dengler, Marcus. Geomar-Helmholtz Centre for Ocean Research Kiel; AlemaniaFil: DeYoung, Brad. Memorial University of Newfoundland; CanadáFil: Dong, Shenfu. University of Miami; Estados UnidosFil: Escribano, Ruben. Universidad de Concepción; ChileFil: Fassbender, Andrea J.. Monterey Bay Aquarium Research Institute; Estados Unido

Epilepsy due to PNPO mutations: genotype, environment and treatment affect presentation and outcome

Mutations in PNPO are a known cause of neonatal onset seizures that are resistant to pyridoxine but responsive to pyridoxal phosphate (PLP). Mills etal. show that PNPO mutations can also cause neonatal onset seizures that respond to pyridoxine but worsen with PLP, as well as PLP-responsive infantile spasm